GgaEX6046403 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C788]
Coordinates
chr9:15158254-15159521:-
Coord C1 exon
chr9:15159345-15159521
Coord A exon
chr9:15158982-15159123
Coord C2 exon
chr9:15158254-15158441
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTCTTACTGACACCTGTAGACT
3' ss Score
6.06
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATATATGAAGTTTTCCCATGGCCTTTAGGGCACCTCCCGGGACCCATACGAAAAATAGAATCTTGCTGTAATTTTATTCGTTCTTTCATAAGGCAAGAGATCAAAAGTCACAGGGATAGACGCGCAGTGGATGAACCAAAAGATTTCATTGACTTTTACCTGGATCAGATGGAGAAA
Seq A exon
ACTAAAAATGTCCCAAATTCCACCTATGATGAAGAAAACATGTTGCAGTCTGTTTTTGATCTCTTCCTGGGTGGCTCAGAGACCACAGCTACCACTCTACGTTGGGCATTACTCTATATGGTGGCTTATCCAGACATCCAAG
Seq C2 exon
AGAAAGTCCAGAAGGAGCTGGATGCTGTTCTGGGTTCTTCCCACCAAATCGACTATGAGGATCGGAAGAAACTGCCTTATACAAATGCTGTGATTCACGAGATCATTCGCTTTAGCAGCATCATTTTAATCACTATTCCTAGGCAAGCAGTGAAGGATACAACTGTGTTGGGTTATCAGGTTCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008178-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGACGCGCAGTGGATGAAC
R:
CGGAACCTGATAACCCAACACA
Band lengths:
247-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]