MmuEX6061406 @ mm9
Exon Skipping
Gene
ENSMUSG00000022818 | Cyp2ab1
Description
cytochrome P450, family 2, subfamily ab, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3644957]
Coordinates
chr16:20312302-20313974:-
Coord C1 exon
chr16:20313801-20313974
Coord A exon
chr16:20313101-20313242
Coord C2 exon
chr16:20312302-20312489
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCTCACCTTCACCAGGCC
3' ss Score
8.2
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTGTATGACATGTTTCCCTGGGCCCTCCGCCACCTCTCAGGACCCCATCAGAAGATATTTCAGTACCACGAGGCTGTGAGGGGCTTCATTCGCCACGAAATCATCAGGCACAAACTCAGAACAGCTGAGGCCCCCAAGGATTTCATCAACTGCTACCTGTCACAAATCACCAAG
Seq A exon
GCCATCGATGACCCTGTCTCTACATTCAGTGAGGAGAACCTGATCCAAGTGGTGATCGACCTGTTTCTGGGAGGCACAGACACCACGGCCACCACACTGCACTGGGCACTCATATACCTGGTCCATCACAGAGCCATCCAAG
Seq C2 exon
AGCGCGTGCAGCAGGAGCTGGATGAGATGCTGGGAGCTGCACAGACCATCTGCTATGAGGACCGAGAGCGACTGCCCTACACCCGTGCTGTCCTCCACGAGGTGCAGCGCCTTAGCAGCGTTGTAGCTGTGGGCGCTGTACGCCAGTGTGTGACTTCCACCTGGATGCATGGTTATTATGTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022818-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(20.1=98.2)
A:
PF0006717=p450=FE(17.5=100)
C2:
PF0006717=p450=FE(23.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGCCACGAAATCATCAGGC
R:
GGAAGTCACACACTGGCGTAC
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: