GgaEX6046405 @ galGal3
Exon Skipping
Gene
ENSGALG00000008178 | E1C788_CHICK
Description
NA
Coordinates
chr9:16787356-16788526:-
Coord C1 exon
chr9:16788339-16788526
Coord A exon
chr9:16787672-16787813
Coord C2 exon
chr9:16787356-16787516
Length
142 bp
Sequences
Splice sites
3' ss Seq
CAACGGCATCTTCCTTGCAGGGT
3' ss Score
8.69
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AGAAAGTCCAGAAGGAGCTGGATGCTGTTCTGGGTTCTTCCCACCAAATCGACTATGAGGATCGGAAGAAACTGCCTTATACAAATGCTGTGATTCACGAGATCATTCGCTTTAGCAGCATCATTTTAATCACTATTCCTAGGCAAGCAGTGAAGGATACAACTGTGTTGGGTTATCAGGTTCCGAAG
Seq A exon
GGTACCATCATCATGGCAAACATAGACTCAACTCTTTTTGACCCTGAGTATTGGGAGACCCCTCACCAGTTCAACCCTGGCCATTTCTTGGACAAGGATGGGAATTTTGTGATCCGAGAGGCGTTCCTAGCCTTCTCAGCAG
Seq C2 exon
GTCATCGCGTGTGTCTGGGAGAGGTGATGGCCAAGATGGAGCTTTTCATCATCTTCTGCAGCCTGCTGCAGATATTCAAGTTCACCCCACCAGAAGGAGATAAGGAAATCAATCTGAGCTTTGTCTTTGGGAGCACAATGAAACCTCACCCATATAAGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008178-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCTTCCCACCAAATCGACT
R:
TCCTTCTGGTGGGGTGAACTT
Band lengths:
254-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]