MmuEX0013323 @ mm10
Exon Skipping
Gene
ENSMUSG00000022818 | Cyp2ab1
Description
cytochrome P450, family 2, subfamily ab, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3644957]
Coordinates
chr16:20308387-20312416:-
Coord C1 exon
chr16:20312229-20312416
Coord A exon
chr16:20310082-20310223
Coord C2 exon
chr16:20308387-20309981
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACTTCAGCTCTTCTCTGCAGGGA
3' ss Score
8.1
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
AGCGCGTGCAGCAGGAGCTGGATGAGATGCTGGGAGCTGCACAGACCATCTGCTATGAGGACCGAGAGCGACTGCCCTACACCCGTGCTGTCCTCCACGAGGTGCAGCGCCTTAGCAGCGTTGTAGCTGTGGGCGCTGTACGCCAGTGTGTGACTTCCACCTGGATGCATGGTTATTATGTCCCCAAG
Seq A exon
GGAACCATCATCCTGCCCAATCTGGCCTCTGTGTTGTATGACCCTGAGTGCTGGGAGAGCCCTCATCAATTCAACCCTGGCCACTTCCTAGACAAGGATGGAAACTTTGTGGCCAACGAGGCCTTCCTGCCCTTCTCTGCAG
Seq C2 exon
GGCATCGGGTGTGTCCTGGGGAGCAGCTTGCCCGAATGGAGCTCTTCCTGATGTTTGCCACCCTCCTCAGGACCTTTCAGTTTCAACTACCAGAAGGGAGCCAGGACCTCGGGCTGGAATATGTCTTTGGTGGTACACTGCAGCCTCAGCCCCAGAAGATTTGCGCAGTGCTTCGCCAGAGCAGCCTCAGCCCTAGGGAGCCCTAGGCCTGCCACTGCAGTCCCCCGACACAGGAGGTTTCCATCTGTCAGCCCTCAAAATCAGGAACTAGGACGAAGTAGATTTCTCCTAGCTCAGCTGCCCCAGTTCTCACACTAGCTCTGATGGCAATCCTGGAAAATGGACATAGCAAGATCTTGCAACAGTAACTAACTGGGTTCGAATAGTTTCTTTCTTAGAGTAGGATAATTATGCTGTGGCAGAGGAGGATTTTATAACGTTTGATAAAGTTTGACTTTGAATCAGTTCACATGGTTCATTTAGGGGGAAATCAAATGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022818_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(23.1=100)
A:
PF0006717=p450=FE(17.5=100)
C2:
PF0006717=p450=PD(20.5=79.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTATGAGGACCGAGAGC
R:
CCTGGCTCCCTTCTGGTAGTT
Band lengths:
245-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types