RnoEX6057732 @ rn6
Exon Skipping
Gene
ENSRNOG00000042367 | Cyp2ab1
Description
cytochrome P450, family 2, subfamily ab, polypeptide 1 [Source:RGD Symbol;Acc:1586963]
Coordinates
chr11:84510449-84514328:+
Coord C1 exon
chr11:84510449-84510636
Coord A exon
chr11:84513109-84513250
Coord C2 exon
chr11:84513349-84514328
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACATTAGCTCTTCTTTGCAGGGA
3' ss Score
7.81
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
AGAGAGTGCAGCAGGAACTGGATGAGGTGCTGGGTACTGCACAGGCCGTCTGCTATGAGGATCGAGAGCGACTGCCCTACACCCGTGCTGTCCTCCACGAGGTACAGCGCCTTAGCAGCGTTGTGGCCGTGGGCGCTGTACGTCAGTGTGTGACTCCCACCTGGATGCATGGTTACTATGTATCTAAG
Seq A exon
GGAACCATCATCTTGCCCAATCTGGCCTCGGTGCTGTGTGACCCCGAGTGCTGGGAGACCCCTCATCAGTTCAACCCTGGCCACTTCCTAGACAAAGATGGAGACTTTGTGACCAATGAAGCCTTCCTGCCCTTCTCTGCAG
Seq C2 exon
GGCATCGTGTGTGTCCTGGGGAACAGCTTGCCCGAATGGAGCTCTTCCTGATGTTTGCCACCCTCCTCAGGACCTTTCGGTTTCAATTACCAGAAGGGAGCCAGGGCCTCAGGCTGGAATATGTCTTTGGTGGTACACTGCAGCCTCAGCCCCAGAAGATTTGTGCCGTGCCTCGTCTGAGCAGCCTCAGCCCTAGGGAGCCCTAGGCCTGCCCTGCAGTCCCCCAACACACGAGGTTTCCACGTGTCAGCCCCTCAGTATCAGCAGCCAGGAAGAAGTAGATCTTCCTAGCCCAGCTGCCCACAGTTCTCACACTAGCTCTGATGGTAATCCCAGAAAATGCAACCGTACCTGACTGGGTTCTGGCAGTTTCTTTCTTAGAGCAGGATAATTATGCTTTGGCAGAGGAGGATTTTGTAACATTTGGTAAAGTCTGACTCGGTTCACATGGTTCATTTGGGGGGAAATCAAATGTCACAATGTAGTAGCCAAGTAAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042367-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.044
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.0=100)
A:
PF0006717=p450=FE(10.6=100)
C2:
PF0006717=p450=PD(12.4=79.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGATGAGGTGCTGGGTA
R:
CTGAGGAGGGTGGCAAACATC
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]