GgaEX6046916 @ galGal3
Exon Skipping
Gene
ENSGALG00000006081 | TMPRSS12
Description
NA
Coordinates
chrE22C19W28_E50C23:108624-110877:+
Coord C1 exon
chrE22C19W28_E50C23:108624-108895
Coord A exon
chrE22C19W28_E50C23:109557-109699
Coord C2 exon
chrE22C19W28_E50C23:110518-110877
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCTGCTGTCTTCCACTAAAGGCA
3' ss Score
6.76
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGACCCATATTATTGGAGAGCTGTGCTGGGCACGGATAACCTTTGGAAACACGGCAAACACGCAGCGAAAAGAAGCATCACCCACATCTTTGTGCACCCCGAATTCAACAGGGAGACGTTTGAAAACGACATCGCGTTATTTAAGCTCCATTCTGCTGTGCACTACAGCAATTACATCCAGCCCATCTGCTTACCTCCTGCACACCCTCAGCTGTACACCCACAACAAAACAAAGTGCTTCATCAGCGGCTGGGGACGCATAGCAGAAAAAG
Seq A exon
GCAGAACTTCATCTGTGCTGCAAGAGGCAGAAGTGGAAATCATTCCTTCCGATGTCTGTAACGGCTCTGATGCATATGGAGGTCTGATCAATGCCAACATGATCTGTGCTGGCTCTCCATTGGGAGGCGTTGATTCCTGCCAG
Seq C2 exon
GGAGACAGTGGGGGGCCTTTGGCGTGCCACCACCCCACGGCCAACAAATACTACATGATGGGGGTCACCAGCTTTGGGCTCGGCTGCGGCCATCCCAATTTCCCTGGGATCTACGTCCGATTGGCTCCATACAGAAGGTGGATCAAATCCCAACTTCTGCTGAGCAGCACAGCCACGGCTCCTGCCAGCACTGCCCTTACCCTGACCGCTGTAGGGATGGTGCTCCTGTATGCTTCCTAAGACAGCATCAGCATAGCACAGCTCGGCTGGTCCGTTCAGCTCATGTTCCAGACCAGATCTCGGAGCAATAAGATGTATGTCCCGTTGTGTCCATCCAACCTGCATCTGTAAACAACACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006081-'2-3,'2-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.2=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=PD(19.7=58.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCATTCTGCTGTGCACTA
R:
TGGAGCCAATCGGACGTAGAT
Band lengths:
257-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]