MmuEX0048164 @ mm10
Exon Skipping
Gene
ENSMUSG00000045631 | Tmprss12
Description
transmembrane (C-terminal) protease, serine 12 [Source:MGI Symbol;Acc:MGI:1922252]
Coordinates
chr15:100285126-100293053:+
Coord C1 exon
chr15:100285126-100285394
Coord A exon
chr15:100289271-100289413
Coord C2 exon
chr15:100292510-100293053
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGTCGTTCTGCTGCTGACAGGCA
3' ss Score
7.13
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
AGATCCTCTGAAGTGGAGAGCAGTGATGGGGACCAATGACCTCACCCGGAGCCCCTACCACAGCAGGAATATACGAATCACAGACATCATCATACCACCAGATTTCATTATGGAAACTTTCGTAAATGATATCGCACTGTTCCGTTTAAAGAGAGCTGTGAGGTATAATGACTATATTCAGCCCATTTGTCTACCTTTTGGTGTTTTCCAAAAACTGGACCAAAACACAGCGTGTTTTATAAGCGGCTGGGGAAGAACCAGAGAAGAAG
Seq A exon
GCAATGGCACAACCATTTTACAAGAGGCGAAAGTACACTTCATCTCTCGGGAGGTTTGCAGCTCTGACCAGGGCTACAGTGGAATGATTCCCAACACTTCATTCTGTGCAGGTCACGAAAATGGGACCTTTGACTCATGCAGG
Seq C2 exon
GGTGACAGCGGGGGACCACTAATGTGCTACCTACCGGAACACAGCAGATACTTTGTCATGGGAATCACCAGTTACGGACATGGCTGTGGGCGGAGACATTTCCCCGGTGTCTACAGCAACCCGAGCTTCTTCCAGGAGTGGATGACACATTATTTATCACAGGGAAACATCAACCGCCTGTTTAATATGGACATAGTACTTGGCCAGGTCCTCACAGCCCTAGGTTCTGTCATCCTACTAGGAGTAACATAAGGAACCTTTGGGGCAGAGGGTCACCCTGCCCCTGCTGTGTCTACACCAGAACACTGTGTGCATGGCTCACTTTAGTGCGTCCATGTCAACACTGGGATGTTTTTGGTTTTGTTTTTTTAACAAAAAGGATTGTGACAAGTACATAGTTGTGACTTTTGGCACCAAACCCCATGTTTTCTCACTAGACCCTGATTCATAACTCTGTATTTGGAATACTTTCCTAGGGTTTGTATAAAATATTCATTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045631-'5-4,'5-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.1=100)
A:
PF0008921=Trypsin=FE(19.9=100)
C2:
PF0008921=Trypsin=PD(19.9=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGTTTTATAAGCGGCTGG
R:
CTGTGAGGACCTGGCCAAGTA
Band lengths:
257-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types