GgaEX7011866 @ galGal4
Exon Skipping
Gene
ENSGALG00000006081 | TMPRSS12
Description
transmembrane (C-terminal) protease, serine 12 [Source:HGNC Symbol;Acc:HGNC:28779]
Coordinates
chrLGE22C19W28_E50C23:133607-135861:+
Coord C1 exon
chrLGE22C19W28_E50C23:133607-133878
Coord A exon
chrLGE22C19W28_E50C23:134540-134682
Coord C2 exon
chrLGE22C19W28_E50C23:135501-135861
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCTGCTGTCTTCCACTAAAGGCA
3' ss Score
6.76
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGACCCATATTATTGGAGAGCTGTGCTGGGCACGGATAACCTTTGGAAACACGGCAAACACGCAGCGAAAAGAAGCATCACCCACATCTTTGTGCACCCCGAATTCAACAGGGAGACGTTTGAAAACGACATCGCGTTATTTAAGCTCCATTCTGCTGTGCACTACAGCAATTACATCCAGCCCATCTGCTTACCTCCTGCACACCCTCAGCTGTACACCCACAACAAAACAAAGTGCTTCATCAGCGGCTGGGGACGCATAGCAGAAAAAG
Seq A exon
GCAGAACTTCATCTGTGCTGCAAGAGGCAGAAGTGGAAATCATTCCTTCCGATGTCTGTAACGGCTCTGATGCATATGGAGGTCTGATCAATGCCAACATGATCTGTGCTGGCTCTCCATTGGGAGGCGTTGATTCCTGCCAG
Seq C2 exon
GGAGACAGTGGGGGGCCTTTGGCGTGCCACCACCCCACGGCCAACAAATACTACATGATGGGGGTCACCAGCTTTGGGCTCGGCTGCGGCCATCCCAATTTCCCTGGGATCTACGTCCGATTGGCTCCATACAGAAGGTGGATCAAATCCCAACTTCTGCTGAGCAGCACAGCCACGGCTCCTGCCAGCACTGCCCTTACCCTGACCGCTGTAGGGATGGTGCTCCTGTATGCTTCCTAAGACAGCATCAGCATAGCACAGCTCGGCTGGTCCGTTCAGCTCATGTTCCAGACCAGATCTCGGAGCAATAAGATGTATGTCCCGTTGTGTCCATCCAACCTGCATCTGTAAACAACACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006081-'6-5,'6-3,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.2=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=PD(19.7=58.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCATTCTGCTGTGCACTA
R:
TGGAGCCAATCGGACGTAGAT
Band lengths:
257-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]