RnoEX0042445 @ rn6
Exon Skipping
Gene
ENSRNOG00000021097 | Hpn
Description
hepsin [Source:RGD Symbol;Acc:61982]
Coordinates
chr1:89534619-89535310:-
Coord C1 exon
chr1:89535215-89535310
Coord A exon
chr1:89534916-89535058
Coord C2 exon
chr1:89534619-89534783
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCTTACCCATGTCCCCTCAGGCC
3' ss Score
9.88
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AATACATCCAGCCGGTGTGTCTCCCTGCTGCGGGACAGGCCCTGGTGGACGGCAAGGTCTGTACAGTGACCGGCTGGGGTAACACACAGTTCTATG
Seq A exon
GCCAGCAAGCTGTGGTGCTCCAAGAGGCCCGGGTCCCCATCATAAGCAACGAAGTTTGCAACAGCCCCGACTTCTACGGGAATCAGATCAAACCCAAGATGTTCTGTGCTGGCTATCCTGAGGGTGGTATTGATGCATGCCAG
Seq C2 exon
GGTGACAGCGGAGGCCCCTTTGTATGTGAGGACAGAATCTCTGGAACATCAAGATGGCGGCTCTGCGGCATTGTAAGCTGGGGTACGGGCTGTGCTTTGGCCCGGAAGCCGGGAGTGTACACCAAAGTCATTGACTTCCGGGAGTGGATCTTCCAGGCCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021097-'13-18,'13-15,15-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.4=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=PD(0.7=1.8),PF0008921=Trypsin=PD(96.2=89.5)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACATCCAGCCGGTGTGTCT
R:
TCCACTCCCGGAAGTCAATGA
Band lengths:
243-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]