MmuEX6009975 @ mm9
Exon Skipping
Gene
ENSMUSG00000001249 | Hpn
Description
hepsin [Source:MGI Symbol;Acc:MGI:1196620]
Coordinates
chr7:31884234-31884920:-
Coord C1 exon
chr7:31884825-31884920
Coord A exon
chr7:31884525-31884667
Coord C2 exon
chr7:31884234-31884398
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCTTACCCATGTCCCCTTAGGCC
3' ss Score
10.08
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AATACATCCAGCCAGTGTGTCTCCCTGCTGCGGGACAGGCCCTGGTGGATGGCAAGGTCTGTACTGTGACCGGCTGGGGTAACACACAGTTCTATG
Seq A exon
GCCAACAGGCTATGGTGCTCCAAGAGGCCCGGGTTCCCATCATAAGCAACGAAGTTTGCAACAGCCCCGACTTCTACGGGAATCAGATCAAGCCCAAGATGTTCTGTGCTGGCTATCCTGAGGGTGGCATTGATGCGTGCCAG
Seq C2 exon
GGCGACAGTGGAGGCCCCTTTGTGTGTGAAGACAGCATCTCTGGGACATCAAGGTGGCGGCTATGTGGCATTGTAAGCTGGGGTACGGGCTGTGCTTTGGCCCGGAAGCCAGGAGTGTACACCAAAGTCACTGACTTCCGGGAGTGGATCTTCAAGGCCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001249-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.4=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=PD(20.6=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCCAGCCAGTGTGTCTCC
R:
AGATCCACTCCCGGAAGTCAG
Band lengths:
244-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: