GgaEX6025892 @ galGal4
Exon Skipping
Gene
ENSGALG00000007340 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr24:5494120-5495259:-
Coord C1 exon
chr24:5495161-5495259
Coord A exon
chr24:5494356-5494498
Coord C2 exon
chr24:5494120-5494272
Length
143 bp
Sequences
Splice sites
3' ss Seq
GCTTCTCCCTCCCTCCCCAGCAC
3' ss Score
9.87
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
ACACCATTGGAGCGCTGTGCCTGCTGCCCTCCCACCAGGACCTGCTCCCGGGCACGCCGTGCTGGGTGTCGGGCTGGGGCTACACCGGGCCTGACCAAC
Seq A exon
CACAGCTCACCGAGACGCTGAAGGAAGCCCTCGTGCCGTTGATCAGCACCCAGAGGTGCAACAGCTCGTGCATGTACGCGGGAGAGCTCACGGGCAGGATGCTGTGCGCCGGGTACCCGCAGGGGAAGATCGATGCCTGCCAG
Seq C2 exon
GGTGACAGCGGGGGCCCCCTGGTCTGCCAGGATGAGCTGGCGTGGCGCTTGGTGGGCATCGTCAGCTGGGGCCGGGGCTGCGCCGAACCAAACCGCCCGGGGGTTTACACCAACGTGGCTCAGCTTCTGCCCTGGATTTATCACATCACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007340-'10-10,'10-8,12-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.3=100)
A:
PF0008921=Trypsin=FE(20.4=100)
C2:
PF0008921=Trypsin=PD(19.6=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCATTGGAGCGCTGTG
R:
TGTGATAAATCCAGGGCAGAAGC
Band lengths:
244-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]