MmuEX0048174 @ mm9
Exon Skipping
Gene
ENSMUSG00000032268 | Tmprss5
Description
transmembrane protease, serine 5 (spinesin) [Source:MGI Symbol;Acc:MGI:1933407]
Coordinates
chr9:48922599-48923722:+
Coord C1 exon
chr9:48922599-48922697
Coord A exon
chr9:48923138-48923280
Coord C2 exon
chr9:48923570-48923722
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTGTGTCTCCTACAGCTC
3' ss Score
12.86
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
ACACCGTGGGCGCTGTGTGCTTGCCGGCCAAGGAGCAGCACTTTCCATGGGGGTCGCAGTGCTGGGTGTCTGGCTGGGGCCACACCGACCCCAGCCATA
Seq A exon
CTCATAGCTCAGATACACTGCAGGACACAATGGTACCCCTGCTCAGCACCTACCTCTGCAACAGCTCATGCATGTACAGTGGGGCACTTACACACCGCATGTTGTGTGCTGGCTACCTGGATGGAAGGGCAGACGCATGCCAG
Seq C2 exon
GGAGACAGCGGGGGACCCCTGGTATGTCCCAGTGGTGACACGTGGCACCTTGTAGGGGTGGTCAGCTGGGGTCGTGGCTGTGCAGAGCCCAATCGCCCAGGTGTCTATGCCAAGGTAGCAGAGTTCCTGGACTGGATCCATGACACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032268_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.3=100)
A:
PF0008921=Trypsin=FE(20.3=100)
C2:
PF0008921=Trypsin=PD(19.5=88.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCGCTGTGTGCTTG
R:
GCACAGTGTCATGGATCCAGT
Band lengths:
245-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: