DreEX6075828 @ danRer10
Exon Skipping
Gene
ENSDARG00000087717 | tmprss5
Description
transmembrane protease, serine 5 [Source:ZFIN;Acc:ZDB-GENE-131121-184]
Coordinates
chr15:18228541-18230868:-
Coord C1 exon
chr15:18230770-18230868
Coord A exon
chr15:18228785-18228927
Coord C2 exon
chr15:18228541-18228693
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTGTATTTTTTTTTCACAAGTTC
3' ss Score
5.02
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ACACTATCAGACCTGTATGTCTACCGCAGTATGACCATGATCTACCAGGAGGAACCCAGTGCTGGATCTCTGGTTGGGGATATACACAACCGGATGATG
Seq A exon
TTCTTATACCAGAAGTTCTCAAAGAGGCACCCGTACCTTTAATAAGCACAAAGAAATGCAATAGCTCTTGCATGTACAATGGAGAGATCACCTCTCGAATGCTCTGCGCAGGATACTCTGAAGGAAAAGTAGACGCATGTCAG
Seq C2 exon
GGGGACAGTGGTGGTCCTCTGGTTTGCCAGGATGAAAATGTCTGGAGGCTGGTTGGAGTTGTAAGCTGGGGAACAGGCTGTGCTGAGCCAAACCATCCAGGAGTTTATAGCAAAGTGGCTGAGTTTTTAGGGTGGATATATGACATTATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087717-'10-16,'10-15,12-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.2=100)
A:
PF0008921=Trypsin=FE(20.2=100)
C2:
PF0008921=Trypsin=PD(19.3=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATCAGACCTGTATGTCTACCGC
R:
TGTCATATATCCACCCTAAAAACTCA
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]