RnoEX0092129 @ rn6
Exon Skipping
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53426183-53426995:+
Coord C1 exon
chr8:53426183-53426275
Coord A exon
chr8:53426407-53426438
Coord C2 exon
chr8:53426843-53426995
Length
32 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGTGTCTTCTACAGCTC
3' ss Score
12.48
5' ss Seq
ATGGTACCC
5' ss Score
4.36
Exon sequences
Seq C1 exon
GAGCATCATGACCTCAGCGTTTGGTAGACTGCATCTTCCTCGTGGTCTCCTCATTCCCAGCTGGGAGTCTGGAAGACTTGTCCTCTGGCCCAG
Seq A exon
CTCATAGCTCAGATACACTGCAGGACACAATG
Seq C2 exon
GGAGACAGTGGGGGACCCCTGGTGTGTCCCAGTGGTGACACGTGGCACCTTGTAGGGGTGGTCAGCTGGGGTCGTGGCTGTGCAGAGCCCAATCGCCCAGGTGTCTATGCCAAAGTAGCAGAGTTCCTGGACTGGATCCATGACACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058-'14-19,'14-18,15-19
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(1.4=50.0)
A:
PF0008921=Trypsin=FE(20.3=100)
C2:
PF0008921=Trypsin=PD(19.5=88.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCGTGGTCTCCTCATTCC
R:
CTACAAGGTGCCACGTGTCAC
Band lengths:
112-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]