BtaEX6058165 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017650 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr15:24579292-24580368:-
Coord C1 exon
chr15:24580270-24580368
Coord A exon
chr15:24579719-24579861
Coord C2 exon
chr15:24579292-24579447
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCCCATCTACCTCCCTGCAGCCC
3' ss Score
10.6
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
ACACCGTGGGCGCCGTGTGCCTGCCGGCTGAAGAGCGGGATTTTCCGAGGGGCTCGGAGTGCTGGGTGTCTGGCTGGGGCCACACTGACCCCGGCCACA
Seq A exon
CCCGCAGCTCCGACGTGCTCCAGGACTCCGTGGTCCCTCTGCTCAGCACCCAGCTCTGCAACAGCTCTTGCGTGTACAGCGGGGCTCTGACGCCCCGCATGCTGTGTGCCGGCTATCTCGACGGGAGGGCGGATGCGTGCCAG
Seq C2 exon
GGGGACAGCGGGGGTCCCCTGGTGTGCCTGGACGAGGGCACGTGGCGCCTGGTGGGGGTGGTCAGCTGGGGACACGGCTGCGCAGAACCCAGCCACCCCGGAGTCTACGCCAAGGTTGCCGAGTTCCTGGACTGGATTCAGGACACGGCAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017650-'10-13,'10-12,11-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.3=100)
A:
PF0008921=Trypsin=FE(20.3=100)
C2:
PF0008921=Trypsin=PD(19.5=86.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGAGCGGGATTTTCC
R:
CGCTGCCGTGTCCTGAATC
Band lengths:
226-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]