BtaEX0017369 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003829 | HPN
Description
Bos taurus hepsin (HPN), mRNA. [Source:RefSeq mRNA;Acc:NM_001080241]
Coordinates
chr18:45990524-45991304:+
Coord C1 exon
chr18:45990524-45990619
Coord A exon
chr18:45990815-45990957
Coord C2 exon
chr18:45991140-45991304
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCTTGCCCACACACCCCCAGGCC
3' ss Score
7.3
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGTACATCCAGCCCGTGTGTCTCCCGGCTGCCGGGCAGGCCCTGGTGGATGGCAAGATCTGCACGGTGACTGGCTGGGGCAACACGCAGTACTACG
Seq A exon
GCCAACAGGCTGGGGTGCTCCAGGAGGCCCGAGTCCCCATAATCAGCAATGATGTCTGCAACGGCCCCGACTTCTACGGGAACCAGATCAAGCCCAAGATGTTCTGTGCTGGCTACCCTGAGGGTGGCATTGATGCCTGCCAG
Seq C2 exon
GGCGACAGTGGTGGCCCCTTCGTGTGTGAGGATAGCATCTCTCGGACGCCACGTTGGCGGCTGTGTGGCATTGTGAGCTGGGGCACCGGCTGTGCCCTGGCCCAGAAGCCAGGCGTCTACACCAAAGTCAGTGACTTCCGGGAGTGGATCTTCCAGGCCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003829_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.4=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=PD(20.6=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATCCAGCCCGTGTGTCTC
R:
GATCCACTCCCGGAAGTCACT
Band lengths:
244-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development