GgaEX6025857 @ galGal4
Exon Skipping
Gene
ENSGALG00000007406 | TMPRSS4
Description
transmembrane protease, serine 4 [Source:HGNC Symbol;Acc:HGNC:11878]
Coordinates
chr24:5438099-5438712:+
Coord C1 exon
chr24:5438099-5438194
Coord A exon
chr24:5438276-5438415
Coord C2 exon
chr24:5438552-5438712
Length
140 bp
Sequences
Splice sites
3' ss Seq
CCGCATTTTGCTGCGTGCAGGCA
3' ss Score
5.78
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACAGCACCAAGCCCATCTGCCTGCCCTACTTCGACGAGGAGCTGGAGCCGGACACCCCGCTGTGGGTGATAGGTTGGGGCTACACGCAGCAGAACG
Seq A exon
GCAAACTGTCAGAGGCCCTGCAGCAGGCAGAAGTGAGGCTGATCAGCATGCAGAGCTGCAACCTGCAGGCGTACCATGGCAAGGTGACACAGAAGATGCTGTGCGCCGGGCTGCTCGAGGGCGGGGTGGACACCTGCCAG
Seq C2 exon
GGGGACAGCGGAGGGCCTCTGCTGTATGCAAACAGGCACTGGCAGGTGGTGGGCATCGTCAGCTGGGGCTTCGGCTGCGGCACCCCCAGCACACCCGGTGTCTACACCAGCGTCCGAGCGTACCTCGACTGGATCTACGCCGTCCGCAGGGTCAGTGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007406-'9-15,'9-14,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.3=100)
A:
PF0008921=Trypsin=FE(20.6=100)
C2:
PF0008921=Trypsin=PD(19.7=83.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATCTGCCTGCCCTACTTC
R:
CACTGACCCTGCGGACGG
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]