GgaEX6025857 @ galGal3
Exon Skipping
Gene
ENSGALG00000007406 | F1N9M8_CHICK
Description
NA
Coordinates
chr24:5558347-5559230:+
Coord C1 exon
chr24:5558347-5558442
Coord A exon
chr24:5558524-5558663
Coord C2 exon
chr24:5558800-5559230
Length
140 bp
Sequences
Splice sites
3' ss Seq
CCGCATTTTGCTGCGTGCAGGCA
3' ss Score
5.78
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACAGCACCAAGCCCATCTGCCTGCCCTACTTCGACGAGGAGCTGGAGCCGGACACCCCGCTGTGGGTGATAGGTTGGGGCTACACGCAGCAGAACG
Seq A exon
GCAAACTGTCAGAGGCCCTGCAGCAGGCAGAAGTGAGGCTGATCAGCATGCAGAGCTGCAACCTGCAGGCGTACCATGGCAAGGTGACACAGAAGATGCTGTGCGCCGGGCTGCTCGAGGGCGGGGTGGACACCTGCCAG
Seq C2 exon
GGGGACAGCGGAGGGCCTCTGCTGTATGCAAACAGGCACTGGCAGGTGGTGGGCATCGTCAGCTGGGGCTTCGGCTGCGGCACCCCCAGCACACCCGGTGTCTACACCAGCGTCCGAGCGTACCTCGACTGGATCTACGCCGTCCGCAGGGTCAGTGCCCTTTGCACCTTATGGTCACCGCTCTGCCGTGGCTTCCCTTTGCCATTCCTCTCCTCTCTCCCCTTGCAGTCGGAGCTCTGAGACCTGCCAGGACATCGGTGCTGTGCCAGCGGCCGGACGAGGAGGCAAAGGGCAGCTCAGGCAGCGGCCACAGCCTCGGAATGCACCCAGCTGGAGCTCCCTTCCAGAGAGAGATTAATTTATTGCCCTGTGCTGATCCTGCTGTGTCAGGGTCTACGCTGCTCTTTGCTCATTACTGTTTTACAGAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007406-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.3=100)
A:
PF0008921=Trypsin=FE(20.6=100)
C2:
PF0008921=Trypsin=PD(19.7=55.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGATAGGTTGGGGCTACA
R:
AGGAGAGGAATGGCAAAGGGA
Band lengths:
247-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]