DreEX6094955 @ danRer10
Exon Skipping
Gene
ENSDARG00000062758 | CR352265.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1QV82]
Coordinates
chr24:21667169-21671539:-
Coord C1 exon
chr24:21671268-21671539
Coord A exon
chr24:21668213-21668349
Coord C2 exon
chr24:21667169-21668120
Length
137 bp
Sequences
Splice sites
3' ss Seq
TGAAACCCTCTTGATTCCAGGAG
3' ss Score
5.98
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTACTCTGATGCGCGCTCGTGGAGGGCCTACATGGGAATGCGAGTGATGAACTCAGTCAGTAACGCAGCAGCGACCAGACAAATCCGCCGCATCGTCCTGCATTCGCAATACGATCAGTTTACCTCAGACTATGACATTGCCCTGCTGGAACTGAGCGCTCCAGTGTTTTTCAATGAGCTGGTCCAGCCGGTCTGTGTACCGGCCCCATCCCACGTCTTCACCTCCGGAACCAGCTGCTTCGTCACTGGATGGGGAGTCCTGACTGAAGAAG
Seq A exon
GAGAACTAGCCACATTGCTGCAGGAAGCCACGGTTAACATCATCAATCACAACACTTGCAATAAAATGTACGATGATGCGGTCACTCCCAGAATGCTTTGCGCCGGAAACATTCAGGGAGGAGTGGACGCTTGTCAG
Seq C2 exon
GGAGACTCCGGAGGGCCTTTAGTGTGTCTGGAACGGGGCCGCAGGTGGTTTCTAGCAGGCATCGTGAGTTGGGGTGAGGGCTGCGCTCGACAGAATCGGCCCGGAGTTTACACGCGTGTCATTAAGTTCACAGACTGGATTCACCAGCAGACGAAAGGCCAGGTGTGACACGCACAAAAACACACACACACACACATGCATATACAAATATATATATAAATATATACACACCAGAGAACGGGTGATCACCCATGCTCAGATGCATGTGATGGAAGTGCACCGGCCCTGCTTTCATGGTGCACAGACATGGCAAACATCAACACCCCTGCATCAGAAAGCAATGTCCCATAATTCCCATGTTGCTCGGAGTTTGAAATCTCCACTCACAGTCTGTCAGTCTTTATGCCCCAAACTCAGCCAACACAAACCAGCTGTACTTTCTAAAACCTGGACTACTAATGTAGAGATTGAAGAGATGTGCATTATTTGCAGCGGAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062758-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.9=100)
A:
PF0008921=Trypsin=FE(19.2=100)
C2:
PF0008921=Trypsin=PD(19.7=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACATTGCCCTGCTGGAAC
R:
GTAAACTCCGGGCCGATTCTG
Band lengths:
252-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]