BtaEX6102447 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019712 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:HGNC:11344]
Coordinates
chr29:36969948-36971367:+
Coord C1 exon
chr29:36969948-36970222
Coord A exon
chr29:36970487-36970623
Coord C2 exon
chr29:36970759-36971367
Length
137 bp
Sequences
Splice sites
3' ss Seq
CCGCCCTTGCTCCTCCGCAGGCC
3' ss Score
10.29
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTACTCGGAACACAGTGTGTGGACAGCCTTCCTGGGCCTGCATGACCAGAGCAAGCGCAACGCCCCGGGGGTTCAGGAGCGCGGGCTGCAGCGCATCATCAAGCACCCGTTCTTCAACGACTTCACCTTCGACTACGACATCGCGCTGCTGCAGCTGGACCGGCCGGTGGAGTACAGCGCCACCATCCGGCCCATCTGCCTGCCCGCGGCCGACTACACCTTCCCCACCGGCAAGGCCATCTGGGTCACCGGCTGGGGCCACACGCAGGAGGCAG
Seq A exon
GCCAGGGGGCTATGATCCTGCAGAAGGGCGAGATCCGGGTCATCAACCAGACGACTTGCGAGCACCTGCTGCCGCAGCAGATAACCCCACGCATGATTTGCGTGGGCTACCTCAGCGGTGGCGTGGACGCCTGCCAG
Seq C2 exon
GGCGACTCCGGGGGCCCCCTGTCCAGCCCGGAGGAGGATGGGCGGATGTTTCAGGCCGGCGTGGTGAGCTGGGGAGAGGGCTGCGCACAGAGGAACAAGCCCGGCGTGTACACGAGGCTCCCAGTGTTCCGGGACTGGATTAAAGCGCAGATCGGGGTATAGATACGAGGCCCAGCTGCAGTCACCCCAGGTGCCCACCTGCCGGCCGAGGAAGGGATTGCTCCGCATGCCCCCGCCTCGGGCCCCGGAACCCAGACTGTGAACTGATCCCCGAGACTGCGGATGGAGGGGCCTTCCCACTCAGCCTCGGAAGTGGGGGTGGGGTGGGGAGGACCCGGCTGTGCCGGGAGGCGCGTTAGAGGACGGAACCTCCCCTCTCCAAGCTGGCCTGCTTCGCTTGGTCTGCCTGGAGCACGGGAGCAGCTGTCGTGTGGCCTCTGGGACCCCTTGGTGGGGCTGGTGCCACCCCCAGGGTCACAGTCTTCAGGAAGCTCAGGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019712-'28-29,'28-27,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.226
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
PF0008921=Trypsin=FE(19.1=100)
C2:
PF0008921=Trypsin=PD(19.6=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCGCATCATCAAGCA
R:
CTGAAACATCCGCCCATCCTC
Band lengths:
244-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]