MmuEX6064798 @ mm9
Exon Skipping
Gene
ENSMUSG00000031995 | St14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:MGI Symbol;Acc:MGI:1338881]
Coordinates
chr9:30896987-30899196:-
Coord C1 exon
chr9:30898922-30899196
Coord A exon
chr9:30897987-30898123
Coord C2 exon
chr9:30896987-30897612
Length
137 bp
Sequences
Splice sites
3' ss Seq
CCCGCTTCCTGTCTCCCCAGGTA
3' ss Score
12.97
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GTACTCAGACTACACGATGTGGACGGCCTTCCTGGGTCTGCTGGACCAGAGCAAGCGCAGTGCCTCTGGGGTGCAGGAGCTGAAGCTCAAACGTATCATCACCCACCCTTCCTTCAATGATTTCACCTTCGACTATGACATCGCCTTGCTGGAGCTGGAGAAGTCGGTGGAGTACAGCACCGTCGTGCGCCCCATCTGCCTGCCTGATGCTACCCATGTCTTCCCTGCTGGCAAGGCCATCTGGGTCACAGGCTGGGGGCACACAAAAGAGGGAG
Seq A exon
GTACCGGAGCGCTGATCCTGCAGAAGGGTGAGATCCGTGTCATCAACCAGACCACCTGTGAGGACCTCATGCCGCAGCAGATCACCCCACGAATGATGTGTGTGGGTTTCCTCAGTGGGGGTGTGGACTCCTGCCAG
Seq C2 exon
GGTGACTCTGGTGGCCCCTTGTCAAGCGCGGAGAAAGATGGGCGAATGTTCCAGGCTGGTGTGGTGAGCTGGGGTGAAGGCTGCGCTCAGAGGAACAAGCCAGGCGTGTACACAAGGCTCCCTGTAGTTCGGGACTGGATCAAAGAGCACACTGGGGTATAGCAGCATGGACAGACAGCCGACCACAAACACCCACAGGGATGCCCGACATGCACACCTGGATACAGGAGAGGAACACTGACGACATTTATGCTGTGGCCTCCCCCCCCCAACACAACCCAGACTGTGAACTGCATCCTTAGGACTCAGAGTTCTTCCAAAGTGGGACCCCCTCAAGAGTTGGAGAGAGAACTTGCGTGCTAGCGGCCCAGCCTGGGGGCAAGGGTTTGATGGCAGCCTTCCCCCTCTAGCCCTGAGCTGGGTGAAGATGATGCTGTCCCGGAGAGCTGCTTCCAACTGTCATTGAGCTCCCGGGAGCCCTATGGGAGGAGGGGCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031995-'29-24,'29-23,31-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.151
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
PF0008921=Trypsin=FE(19.1=100)
C2:
PF0008921=Trypsin=PD(19.6=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGCCTGCCTGATGCTAC
R:
TGTCCATGCTGCTATACCCCA
Band lengths:
256-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: