GgaEX1055669 @ galGal3
Exon Skipping
Gene
ENSGALG00000001331 | F1NLW7_CHICK
Description
NA
Coordinates
chr24:1607466-1609126:+
Coord C1 exon
chr24:1607466-1607740
Coord A exon
chr24:1607973-1608109
Coord C2 exon
chr24:1608674-1609126
Length
137 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTCTGGTCCTTGCAGGCA
3' ss Score
9.47
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTACTCAGACGCCAGCCTGTGGACAGCCTACCTGGGCCTGACCAACCAAAGCAAACGCAACGATGCCAACGTGCAAATGAAGCAAATCAAGCGCATCATCTCCCACCGTTCCTTCAATGACTACACCTACGACTATGATATTGCTGTGATAGAGCTGCAGAGCCCCGTCACCTTCTCCGCTGTCGTCCAGCCCATCTGCCTGCCCGATTCTACGCACAACTTCCCCGTGGGCAAAGACCTGTGGGTGACCGGATGGGGAGCGACCGTGGAAGGAG
Seq A exon
GCAGCGGATCCACCATCTTGCAGAAAGCAGAAATCCGGGTGATCAACCAAACCGTCTGCAACCGGCTGCTGACCGACCAGCTGACAGAGCGCATGATGTGCGTGGGGGTCCTGACGGGCGGCGTGGATGCGTGCCAG
Seq C2 exon
GGAGACTCCGGAGGGCCCCTGGTCAGCGTGGAGAACAGCGGGCGGATGTTCCTGGCTGGCGTTGTGAGCTGGGGAGATGGCTGTGCACAGAGAAACAAACCTGGAGTCTACAGCCGGCTGACAGCACTGCGGACGTGGATCAAGCAGCAGACAGGACTCTAGGGATGTGCTCAACCCTCAGACACAACCAACTCCTGCACAGCACCAGGTGGGGACAACGCGGACTGTGAGGCACTGCCCCAGGAGCTGCCACCATTGTGAGCCTCTACCTCACTGCCTCTGGGACTCCCAACCCTGGGCTGCTGGGTGAGCACAGCCCTTAGTACTTCATCCTCCCAAACCCACATCAACTTACGAATTCCTTACATCCACACATTGATTTCCTCTCTTCTGGGTAAGCAAATGGAGCTCCTGCAACAAACTTGAATGAACAGTCATTCAACAGAGAATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001331-'20-28,'20-27,21-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
PF0008921=Trypsin=FE(19.1=100)
C2:
PF0008921=Trypsin=PD(19.6=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGCCTGCCCGATTCTAC
R:
CCTAGAGTCCTGTCTGCTGCT
Band lengths:
246-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]