RnoEX6035125 @ rn6
Exon Skipping
Gene
ENSRNOG00000005903 | St14
Description
suppression of tumorigenicity 14 [Source:RGD Symbol;Acc:69288]
Coordinates
chr8:32240133-32241773:-
Coord C1 exon
chr8:32241499-32241773
Coord A exon
chr8:32241032-32241168
Coord C2 exon
chr8:32240133-32240737
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTGGCTTACTGTCCCCACAGGAA
3' ss Score
11.07
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GTACTCAGACCACACCATGTGGACAGCCTTCCTCGGTCTGCTGGACCAGAGCAAGCGCAGTGCCTCTGGGGTACAGGAGCACAAGCTCAAACGTATCATCACTCACCCTTCCTTTAATGACTTTACCTTCGACTATGACATTGCCTTGCTGGAGCTGGAGAAGCCGGCAGAGTACAGCACTGTCGTGCGCCCCATCTGCCTGCCTGATAATACCCATGTCTTTCCTGCCGGCAAAGCCATCTGGGTCACAGGCTGGGGCCACACGAAAGAAGGAG
Seq A exon
GAACTGGAGCACTGATCCTGCAGAAGGGAGAGATCCGGGTCATCAACCAGACCACCTGTGAGGAACTCTTGCCGCAGCAGATCACCCCACGAATGATGTGTGTGGGTTTCCTCAGTGGGGGTGTGGACTCCTGCCAG
Seq C2 exon
GGTGATTCCGGTGGCCCCTTGTCCAGTGTGGAGAAAGATGGGCGAATCTTCCAGGCTGGTGTGGTGAGCTGGGGTGAAGGCTGCGCTCAGAGGAACAAGCCAGGCGTGTACACAAGGATCCCTGAAGTTCGGGACTGGATCAAAGAGCAAACTGGGGTATAGAAGCATGGACAGACAACCCACCATGAACTCGCAAAGGGATGCCCCCCACGCGTACCTGGATACAGCAGAGGATCGCTGAGGACATTTGTGCTGTGGCCTCTCCCCCACATCCCAGACTGTGAACTGCTTCCCTAGGACTCAGAATCCTTCCCTGAGCTTCCAAAGTGGGACCCCTCAGGAGTTGGCCAGAGATCTTCTGTGCTGGTGGCCCAGCCCGGGGTGGGGCAAGGATTTGATGGCAGCCTTCCCCTCTAACCCTGAACTGGGTAAAGACGATGCTTTCCTGGAGAACTGCTTCCAGACTCTAAAGGAAAACTATCGTCGCGCTCCTGGGGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005903-'24-18,'24-17,25-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
PF0008921=Trypsin=FE(19.1=100)
C2:
PF0008921=Trypsin=PD(19.6=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCCATCTGGGTCACAGG
R:
TCCCTTTGCGAGTTCATGGTG
Band lengths:
245-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]