DreEX6084753 @ danRer10
Exon Skipping
Gene
ENSDARG00000044655 | st14b
Description
suppression of tumorigenicity 14 (colon carcinoma) b [Source:ZFIN;Acc:ZDB-GENE-061103-613]
Coordinates
chr21:25239086-25243208:-
Coord C1 exon
chr21:25242937-25243208
Coord A exon
chr21:25239516-25239652
Coord C2 exon
chr21:25239086-25239418
Length
137 bp
Sequences
Splice sites
3' ss Seq
AAGTGTTTTCCCCGCTCTAGATG
3' ss Score
7.22
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
ATATTCACAGGCTGACCAGTGGGAGGTCTATCTAGGCCTACACAACCAGGGCGAGACTAGTAAATCTACACAAAGAAGTGTGTTGCGCATCATTCCTCACCCTCAGTATGATCACTCGAGCTACGACAATGACATCGCTCTAATGGAGCTGGACAGTCCTGTGACTCTGAATCAGAACATCTGGCCCATCTGCTTACCTGATCCCACACATTACTTCCCAGCCGGAAAATCTGTATGGATCACTGGCTGGGGCAAGTTAAGAGAGGGAAGCG
Seq A exon
ATGCAGTGCCGTCAGTGTTGCAGAAGGCTGAGGTGCGCATTATTAACAGCACTGTGTGCAGCAAGCTGATGGATGATGGGATTACTCCTCACATGATCTGTGCAGGTGTATTGAGCGGAGGTGTTGATGCCTGCCAG
Seq C2 exon
GGTGACTCCGGCGGTCCAATGTCGTCCATTGAGGGCAATGGGCGCATGTTTCTTGCGGGAGTGGTGAGTTGGGGAGATGGTTGCGGTCGCAGGAACAGACCCGGTGTCTACACACGGGTCACAGATTACCGCAGCTGGATCAGAGAGATCACAGGGATATAAAGCCACAATGGTGACAAGAAAAGGCCTATAGAACAGCTTTCTGTCTTAAGGGGATGATTTATTGTAAATGGAAAAGGTGCATTTACACAAAAATAAGCTTTTTTAAAAACATTGTTTAAAATTGTATTTGATGTTTTTTATTTACTGAAAATAAATTGACGCGTTTTAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044655-'21-21,'21-19,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.9=100)
A:
PF0008921=Trypsin=FE(19.2=100)
C2:
PF0008921=Trypsin=PD(19.7=85.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCATTCCTCACCCTCAG
R:
ACCACTCCCGCAAGAAACATG
Band lengths:
252-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]