MmuEX6065505 @ mm9
Exon Skipping
Gene
ENSMUSG00000032091 | Tmprss4
Description
transmembrane protease, serine 4 [Source:MGI Symbol;Acc:MGI:2384877]
Coordinates
chr9:44981941-44983640:-
Coord C1 exon
chr9:44983542-44983640
Coord A exon
chr9:44983185-44983327
Coord C2 exon
chr9:44981941-44982090
Length
143 bp
Sequences
Splice sites
3' ss Seq
CGTTGCTTTCAACCTCCCAGGAA
3' ss Score
7.86
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCTCAGTCAGGCCCATCTGCCTGCCCTTCTCTGATGAGGTGCTTGTCCCAGCCACACCAGTCTGGGTCATTGGATGGGGCTTTACAGAAGAAAACGGAG
Seq A exon
GAAAGATGTCTGACATGCTACTGCAGGCATCAGTCCAGGTCATTGACAGCACACGGTGCAATGCAGAGGATGCCTACGAAGGGGAAGTGACCGCTGAGATGCTGTGTGCAGGTACCCCACAGGGTGGCAAGGACACCTGCCAG
Seq C2 exon
GGTGACAGTGGTGGGCCTTTGATGTACCATTCTGACAAGTGGCAGGTAGTAGGCATCGTGAGCTGGGGCCATGGATGCGGCGGCCCAAGTACTCCTGGAGTGTATACCAAGGTCACTGCCTATCTCAACTGGATCTACAATGTTCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032091-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.104 C2=0.059
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(24.2=94.1)
A:
PF0008921=Trypsin=FE(20.9=100)
C2:
PF0008921=Trypsin=PD(19.6=88.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTCAGGCCCATCTGC
R:
TCCGAACATTGTAGATCCAGTTGA
Band lengths:
246-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: