DreEX6012255 @ danRer10
Exon Skipping
Gene
ENSDARG00000012860 | tmprss4b
Description
transmembrane protease, serine 4b [Source:ZFIN;Acc:ZDB-GENE-030131-5862]
Coordinates
chr5:37309694-37312921:+
Coord C1 exon
chr5:37309694-37309836
Coord A exon
chr5:37310743-37310892
Coord C2 exon
chr5:37311601-37312921
Length
150 bp
Sequences
Splice sites
3' ss Seq
AAGTCTTCTCTCTCTTTCAGGGG
3' ss Score
11.21
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GTGCGCTGCCCACAGTGCTGCAGAAAGCCTCTGTGCCGCTGGTCAACAGGTCTGAGTGTTCCAAACCCACTATTTACAGTTCCAGCATTACTCCCAGAATGCTCTGTGCAGGATTCCTCCAAGGAAATGTAGATGCATGTCAG
Seq A exon
GGGGACAGTGGGGGTCCGCTCGTGTACCTCTCATCTCGTTGGCAGTTAATCGGCATAGTGAGTTGGGGAGTGGGCTGTGCACGCGAGGGAAAACCTGGAGTTTACGCTGATGTTACTCAACTTCTAGACTGGATCTACACTGTAATGGAG
Seq C2 exon
AGAAATCCGTGAGATGAAGCATCACTTCATGCTTTCATGATATGAGGAAAGAAGATTATTTTGCTTTTCCTCAGTAGTGTTCATTAATTTAGATGTAAAATTTTTTAATAATATTATAATCTTAATGTTCAGTTTGAAATGATACCAAAACATTATGCATTTTTGGTCACAGTAGCGGTAGCTCTGATATTTTTCCCAGCCATCCTGTTTGTTTACTGTCAAGTTATTGAAATACTGTAAATGTTTTAATATTTTTTTCATGTGCGCTAAAATAAATAAAATAATAAAAGCTTTTACTTGAAACAATCCAGCACACAAGTTTTATCCAAAACATTTTATTTTAGTAGCTTATAATAAAGAAAAATATGCGTGATTGTGCAGTCCCATGTGGAATAACAGGCCCGCACGCTGACTTGAGGTAACAATGGGATCAAGAATTTTGGATTATGGGTTGAGTGGAGCATCTATGATACAGCATGAGGTTTACATTCAGTATGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012860-'18-18,'18-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.4=100)
A:
PF0008921=Trypsin=PD(20.0=88.0)
C2:
NO
Main Skipping Isoform:
ENSDART00000097754fB6713
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCAGGATTCCTCCAAGGA
R:
ACAAACAGGATGGCTGGGAAA
Band lengths:
251-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]