BtaEX6058383 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021518 | TMPRSS4
Description
Bos taurus transmembrane protease, serine 4 (TMPRSS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001101973]
Coordinates
chr15:29229813-29233495:+
Coord C1 exon
chr15:29229813-29229955
Coord A exon
chr15:29231854-29232003
Coord C2 exon
chr15:29232939-29233495
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGCTCTGGCCTCTCTCACAGGGT
3' ss Score
9.93
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGAAGATGTCTGACATACTGCAGCAGGGATCCGTCCAGCTCATCAACAGAACTCGGTGCAATGCAGAGGATGCGTACCAGGGGGAGGTCACCAAGACGATGATGTGTGCAGGCCTCCCGGAGGGCGGCGTGGACACCTGCCAG
Seq A exon
GGTGACAGTGGTGGCCCTCTGATGTATCACTCTGACTGGTGGCAAGTGGTGGGCATCGTGAGCTGGGGCCATGGCTGTGGGGGGCCTACTACCCCAGGAGTATACACTAAGGTCACAGCCTATCTCAACTGGATCTACAATGTCCGGAAG
Seq C2 exon
TCTGATCCATGATGCTCCTGCCCTTGAAGTGCTGGAAACTGCTTCCCCCTGCCCTGCCCACATGGGAATCCCCCAGAAGTCAGACACAGACCAAGAGCCCCCTGGGGCACACCTCTCTGCCCACACTCTCAGCATTTCTAGGTGCAGCAAAGGACCTGCAATCCTGTAAGTCACCCCACAGCTCACAGGCACGCAGGAAATCAGCAGCTCCAGTTCAGCTGCCCATGATGCTCTCGGCATCCCAAGGAGGGAGAGACACAGCCCACCGAACAAGCCAGCCTCCAAGACTGAGGTCTCAGAAGGCATTGCTAAGCCAAGAACTTTCTACTCTATTGAATGGAAACAGACGCTCTTCTAAGAGCCTAGATCACCAAGGGCTGGAGTGGAGGGAGGAGAGGGTCTGAGCCAGCCCTCTGCCTCCCCACCCATCCCCAAGCCCACCTGAACAAGAAACCGTTTATAATGGGAAATGTGCTGTCCTGCTCTTGGCTCAAGTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021518-'18-23,'18-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.9=100)
A:
PF0008921=Trypsin=PD(19.6=88.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTCGGTGCAATGCAGAG
R:
CAGGTCCTTTGCTGCACCTAG
Band lengths:
254-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]