DreEX0080005 @ danRer10
Exon Skipping
Gene
ENSDARG00000103117 | tmprss4a
Description
transmembrane protease, serine 4a [Source:ZFIN;Acc:ZDB-GENE-061103-631]
Coordinates
chr15:12524951-12527918:+
Coord C1 exon
chr15:12524951-12525096
Coord A exon
chr15:12526455-12526604
Coord C2 exon
chr15:12526765-12527918
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGTATTTGTTCCTCTGATAGGGT
3' ss Score
7.7
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAGGAAGCTTGTCTTCAATGTTGCAGAAGGCTCAGATTCAGGTTATAGACAGTGCCCAGTGCTCCAGTCCAACAGTGTACGGCTCATCCATCACTCCCAGGATGATCTGCGCTGGTGTTATGGCTGGAGGAGTGGATGCTTGCCAG
Seq A exon
GGTGATAGCGGTGGTCCACTGGTGCATTTGGCTGACCGCTGGGTGCTGGTTGGAGTAGTCAGCTGGGGTGTAGGTTGTGCCAGACCAGGTTTTCCTGGTGTTTACACCAATGTGGACCAGATGCTTGACTGGGCCCATTCAGTAATGCAG
Seq C2 exon
ACATATAAGTGAGTTTGTGATGGGAACAACTGAGAGGAAAGAATATTTAAGACATACTTCAGGAATTTTGTTAAGGAGTCGCTGGAAGAGTTTTTGGTCCTCATGCTCAGGGTCTTCAAGGTGCCATAAAAAAGATTTTGCACATATATGTACATAATAAAAACATGTGAACTACCACTTTATTTGGGAACACAGCAATGCAATCTTAAAGTAACAGTACTAACAGTTCTAAGTAACAGTACAGTTTTTGTCTTCTATGATACCTAAAAGGATATGTTTTGAAGAATGTTTGCTCTGCTCTTCTGCATCCAATGAAAGCTGATGGAAAGCACGCTCTTAAAAATGAAGCCATTTTTGCTTCCCCAAAGTCATTCACTAAATAGTTCTCAGTTTCCTATGAAGAACTTTATTTATTTTCACTGTAAAAAGCCTTTTGTTGAATGGAGGGATTCCACGCAAGTTTAAAGGCATTTCATGGAACCACAGACAATAATGAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103117-'14-16,'14-15,15-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.1=100)
A:
PF0008921=Trypsin=PD(19.4=88.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAAGGCTCAGATTCAGG
R:
ATGGCACCTTGAAGACCCTGA
Band lengths:
252-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]