RnoEX6035525 @ rn6
Exon Skipping
Gene
ENSRNOG00000016397 | Tmprss13
Description
transmembrane serine protease 13 [Source:RGD Symbol;Acc:1310872]
Coordinates
chr8:49648258-49650860:+
Coord C1 exon
chr8:49648258-49648400
Coord A exon
chr8:49648556-49648708
Coord C2 exon
chr8:49649351-49650860
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCTCTAGCTATTCCTTGCAGGGA
3' ss Score
6.32
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGAAGACATCTCCCTTCCTCCGAGAGGTTCAGGTCAACCTCATCGACTTCAAGAAGTGCAATGACTACTTGGTCTATGACAGTTACCTTACCCCAAGGATGATGTGTGCGGGGGACCTTCGAGGAGGCAGGGACTCCTGCCAG
Seq A exon
GGAGACAGTGGAGGACCCCTCGTCTGTGAGCAGAACAACCGCTGGTACCTGGCAGGAGTCACCAGCTGGGGCACAGGCTGTGGCCAGAAAAACAAGCCTGGGGTGTACACCAAAGTGACAGAAGTACTTCCCTGGATCTATAGAAAGATGGAG
Seq C2 exon
AGTGAGGTACGTTTCCGGAAATCTTAGCCATGCCCTCCTCACATTGGTGACTGCTATGAAGATCCTGGCCAAAGGGATTGGCCATTTGCAACACCTGGACCAGTGACCACCAGGCCTCTTTGTTCATTCCACCTCTGCTGCTTACTGTCTCTGTGATAGTGTCTAAGTGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTACTATTTTTACAAGTTCTTCAGAAAACAGGAAAACTCTTCTCAGAATCCCAGGCTGGAAATCTGGAGTTAAGAGTTTGGGCACCAGGTGTGTCCCTAAGAGTCCATAAGTGGAGGTGGAGCCAAAAATGAGCCCAGGAAGGGCTTGGAACATGACAGCAGCAGTTGTCGCTCTTCTGACTCCAACTTGAAGACCAGCTTGGTTTGGTCAGACCCTCAGCAGTCAGTGACACCATTGCTGTGCTGGGGTAGCATAAAGTTTTGTCAGAGGCTGTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016397-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
PF0008921=Trypsin=PD(19.7=88.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTCCCTTCCTCCGAGAG
R:
CACTGGTCCAGGTGTTGCAAA
Band lengths:
243-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]