GgaEX7010394 @ galGal4
Exon Skipping
Gene
ENSGALG00000021273 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr24:5414102-5414945:-
Coord C1 exon
chr24:5414803-5414945
Coord A exon
chr24:5414567-5414719
Coord C2 exon
chr24:5414102-5414125
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCCCCTCCGTGCCAGGGG
3' ss Score
7.71
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATAACACCTCCCCAAAGCTGCGGGAGGCCGAGGTCAAACTCATTGACTACAAGATCTGCAACAGTGACAAGGTGTACGAGGGCTACCTGACCCCGCGCATGATGTGCGCTGGGTACCTGCAGGGGGGGAAGGATGCGTGCCAG
Seq A exon
GGGGACAGCGGGGGGCCCCTGGTGTGCGAGGACAACGGCCGCTGGTACGTGGCTGGTGTGACGAGCTGGGGGACGGGATGTGGCCAGAAGAACAAGCCTGGGGTATACACACGTGTGACGAAACTCCTCGGCTGGATCTACAGCAAAATGGAG
Seq C2 exon
CTGGAAGCCAGGAGCAGAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021273-'15-17,'15-15,16-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.377 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(15.2=83.3)
A:
PF0008921=Trypsin=PD(19.7=88.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACACCTCCCCAAAGCTGC
R:
GCTTTCTGCTCCTGGCTTCC
Band lengths:
165-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]