DreEX6012254 @ danRer10
Exon Skipping
Gene
ENSDARG00000077573 | tmprss13b
Description
transmembrane protease, serine 13b [Source:ZFIN;Acc:ZDB-GENE-090309-2]
Coordinates
chr5:37287942-37290766:-
Coord C1 exon
chr5:37290624-37290766
Coord A exon
chr5:37290319-37290474
Coord C2 exon
chr5:37287942-37288205
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTATTCTCTCTTTAGGGT
3' ss Score
12.37
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
ATAGTGTTTCCACTTCTCTAATGGAGGTCACAGTAAGCCTGATAGACTCGAGTGTGTGTAACTCACCTAATGTTTACAATGGAGAAATCACCGAGAACATGCAGTGTGCTGGAGACCTTAGAGGAGGAAAAGACTCGTGCCAG
Seq A exon
GGTGACAGTGGTGGTCCATTGGCATGTAAATCAAATGATGGTCAATGGTTTCTCACAGGCGTAACAAGTTGGGGAGAAGGCTGTGGACAGGTGAACCGTCCGGGGGTCTACAGTGATGTAGCCAAATATTTAATGTGGATATATAGCAAGATGCAG
Seq C2 exon
CAAGCACGACCATGACCTTCGACAATCATGAAGAACACACTCATTGCAGATTTGATAGCAGTTTTGCACAGAATGGAACATTTTTTTCTCATTTTTAAAAAAAGTGAAACAGTAAAGCAACATACATTTAGAGTAAATACATTTTTTAGTAAGACTTTAAATTCATAATTTAAATCATGAAAATTCACTTATTTTTTACTGTGTAATTCAATGTATTTATTTTCTAGACATACTGTATGTACTGGAATAAAAACCTGGACTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077573-'15-19,'15-18,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
PF0008921=Trypsin=PD(20.1=88.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTCACAGTAAGCCTGA
R:
TGTATGTTGCTTTACTGTTTCACT
Band lengths:
248-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]