MmuEX6065512 @ mm9
Exon Skipping
Gene
ENSMUSG00000037129 | Tmprss13
Description
transmembrane protease, serine 13 [Source:MGI Symbol;Acc:MGI:2682935]
Coordinates
chr9:45152997-45155664:+
Coord C1 exon
chr9:45152997-45153139
Coord A exon
chr9:45153309-45153461
Coord C2 exon
chr9:45154075-45155664
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCTCTGGCTCTTCCTTGCAGGGA
3' ss Score
10.88
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGAAGACATCTCCCTTCCTCCGAGAGGTTCAGGTCAACCTCATTGACTTCAAGAAGTGCAATGACTACTTGGTCTATGACAGCTACCTTACCCCAAGGATGATGTGTGCCGGGGATCTACGAGGAGGGAGGGACTCCTGCCAG
Seq A exon
GGAGACAGTGGAGGACCTCTCGTCTGTGAGCAGAACAATCGCTGGTACCTGGCAGGTGTCACCAGCTGGGGCACAGGCTGTGGCCAGAAAAACAAGCCTGGTGTGTACACCAAAGTGACAGAAGTACTTCCCTGGATTTACAGAAAGATGGAG
Seq C2 exon
AGTGAGGTACGATTCCGGAAATCTTAACCATGTCCTCCTCACGTTGCTGACTGCTATGAAGATCCTGGGCACAGGGATGGGCCATTTGCAGCATCTGGACCAGTGACCACCAGGCACCTTTGTTTCTTCCACCTCTGCTGTCTGCTGTCTCTGGGAGAGTGTGTATGTGGTGTGTATGTGTTTGCATCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGGTATGTTACTATTATAAATTCTTCAGAAAACAGGAAAACTCAGCTCTTCTCAGAATCCCAGGCTGGAGATCTGGAGTTAAGAGTTTGGGCACCAGGTGTGTTCCTACGAGTCCATAAGTGTGAAGGTGGAGCCAAAAATGAGCCTGGGCAGGACTTGGAACATGACAACAGCAGTTGTCGCTCTTCTGACTCTGACTTGAAGGCCAGCCAGGATTGGTCAGACACCCAACAGCCAGTAACACCATTGCTGTGCTGGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037129-'10-11,'10-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
PF0008921=Trypsin=PD(19.7=88.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGTGTGCCGGGGATCTA
R:
ACACACACACACACACACACA
Band lengths:
255-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: