DreEX0080000 @ danRer10
Exon Skipping
Gene
ENSDARG00000053315 | tmprss3a
Description
transmembrane protease, serine 3a [Source:ZFIN;Acc:ZDB-GENE-070912-70]
Coordinates
chr9:19739498-19747785:-
Coord C1 exon
chr9:19747643-19747785
Coord A exon
chr9:19744369-19744521
Coord C2 exon
chr9:19739498-19739613
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCCGTGTCTTGTTGAAATAGGGT
3' ss Score
8.44
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
GAGATGCAAGTGTGTCTCAGCACTGTGCAAGTGTCCCTCTGATCTCCAATAAGGCCTGCAGTCAGCCGGAGGTTTACCAGGGCTATCTAACAGCAGGAATGATCTGCGCTGGCTATCTGGATGGAGGAACAGACTCCTGTCAG
Seq A exon
GGTGATAGCGGTGGTCCTCTGGCATGTGAGGATTCCTCCATCTGGAAATTGGTGGGGGCCACAAGCTGGGGTCAAGGTTGTGCAGAAAAGAACAAACCCGGGGTTTACACACGCATCACACAGTCCCTCACCTGGATACATCTGCAGATGGAG
Seq C2 exon
AGAGAAGAAATTCTCCATCCGCTAACAGTCAGCTCTAATTACTGAGTTTAATCGTGGGAAATCAGACTTCTGCCTTCAACCAACTTGTGCATTCATATCTGGAAAGGTTTTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053315-'12-12,'12-11,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
PF0008921=Trypsin=PD(19.8=88.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGTGTGTCTCAGCACTG
R:
TCCAGATATGAATGCACAAGTTGGT
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]