GgaEX6004451 @ galGal4
Exon Skipping
Gene
ENSGALG00000016169 | TMPRSS3
Description
transmembrane protease, serine 3 [Source:HGNC Symbol;Acc:HGNC:11877]
Coordinates
chr1:108738273-108739898:-
Coord C1 exon
chr1:108739756-108739898
Coord A exon
chr1:108738950-108739102
Coord C2 exon
chr1:108738273-108738287
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTTAATTCTTTGTCCTCCAGGGA
3' ss Score
8.85
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
Exon sequences
Seq C1 exon
GTGACACATCCGAAACCATGAATTACGCAGGTGTTCCCTTGATTTCTAATAGAATTTGCAATCACAGGGATGTCTATGGTGGGATCATAACCTCTTCAATGCTTTGTGCCGGTTTCCTAAAGGGAGGAGTGGACACCTGCCAG
Seq A exon
GGAGACAGTGGCGGCCCTTTAGCATGTGAAGATATGAGTATCTGGAAGTTGGTGGGAACCACCAGCTTTGGAGTGGGCTGTGCAGAAGCGAACAAGCCTGGTGTCTACAGCCGAACTACCTCCTTCCTGGGCTGGATACATGAGCAGATGGAG
Seq C2 exon
CTCAGTCTGTATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016169-'11-12,'11-11,12-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
PF0008921=Trypsin=PD(19.8=88.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]