RnoEX6062128 @ rn6
Exon Skipping
Gene
ENSRNOG00000001165 | Tmprss3
Description
transmembrane serine protease 3 [Source:RGD Symbol;Acc:1310135]
Coordinates
chr20:9910522-9916188:-
Coord C1 exon
chr20:9916046-9916188
Coord A exon
chr20:9915280-9915432
Coord C2 exon
chr20:9910522-9911813
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGACTCCTTCTGTCCTGCAGGGA
3' ss Score
10.67
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GTGACGCCTCCCCTGTCCTGAACCACGCGGCCGTCCCTTTAATTTCAAACAAGATCTGCAACCACAGGGATGTGTATGGCGGTATCATTTCACCCTCCATGCTCTGTGCGGGCTATCTGAAAGGCGGTGTGGACAGCTGCCAG
Seq A exon
GGAGACAGCGGGGGACCCCTGGTGTGCCAGGAGAGGAGACTGTGGAAGTTAGTGGGTGCGACAAGCTTTGGAATTGGCTGTGCTGAGGTGAACAAGCCTGGAGTCTACACACGAATCACCTCCTTCCTGGACTGGATTCACGAACAGTTGGAG
Seq C2 exon
AGAGATCTGAAGACTTGAAGAAGAGGGAACAAGCCAGCACCTGAGCTCCTGAGGGGTGGACACAGCACGGGCCTTCCCTGGACTCCTGAGTGGACATGTTGGATGGGAGTACCAGCTCTTACCACCCTGCCCATGGCGTTGAAGCATATCCATCCACTGGGATGAGAACCCTTCCAACCCCGACACCCGGAGTTGCTTGCTGCTAAAGCCCCTGGCTTTGAGGCTGAAACAACCTTGGACTCATGTACACAAGCGGCACCTTTCCCGGTCACCCCCCACCCACCCTAGATTTTCTCCTTATAGTTGCTGCCAACACTGGCAAGCTCTCATGCACACCAATCGAACACCAGTTGGTGCAGGAACTGCTGGTGTGGATTGTTGAAGACGCAGTCACCTATTCGTTCTAGCCCCGGGCTCCAGATCTCAACCCAACTGCCTACTTCCAGGAGCTGGTTTTGGGAGTGAGGAACTTAGTCTTTGACTGATTCAGTCTGAGGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001165-'11-12,'11-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
PF0008921=Trypsin=PD(19.8=88.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGGATGTGTATGGCGGTA
R:
AAGGGTTCTCATCCCAGTGGA
Band lengths:
253-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]