MmuEX6065506 @ mm10
Exon Skipping
Gene
ENSMUSG00000032091 | Tmprss4
Description
transmembrane protease, serine 4 [Source:MGI Symbol;Acc:MGI:2384877]
Coordinates
chr9:45172726-45175244:-
Coord C1 exon
chr9:45175102-45175244
Coord A exon
chr9:45173858-45174007
Coord C2 exon
chr9:45172726-45173408
Length
150 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCTGACTTTCCACAGGGT
3' ss Score
10.49
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAAAGATGTCTGACATGCTACTGCAGGCATCAGTCCAGGTCATTGACAGCACACGGTGCAATGCAGAGGATGCCTACGAAGGGGAAGTGACCGCTGAGATGCTGTGTGCAGGTACCCCACAGGGTGGCAAGGACACCTGCCAG
Seq A exon
GGTGACAGTGGTGGGCCTTTGATGTACCATTCTGACAAGTGGCAGGTAGTAGGCATCGTGAGCTGGGGCCATGGATGCGGCGGCCCAAGTACTCCTGGAGTGTATACCAAGGTCACTGCCTATCTCAACTGGATCTACAATGTTCGGAAG
Seq C2 exon
TCTGAGATGTAACGCTGCCGTCCCCCACATCCAGAAGCTGCTTCCCTTCAGACCTACCTACGGCATGACCCCTCAAAGTCAGATATGGGACAAGAGCCTCCTTGAACAAACTCTGGTATCCCTGCAGCAAGCAAGGATACATTGCAGAGGTGCCCGGAGTGGAGTCAGATGGGCTAGCTCAGCCACCCCTGCATCTCCCAAACCCTGGGAGACATGTGGCCCATGGGAGTAAATCCAGGACATTGACTCAACTCTCAGAAGTGTTATTCAGTCAAGGAGGCTCTCCCTTCCACTGAAGGAAGGAAAGTCAGCTCTCTCCTGAAAGGCCAGATCACTGGCTGAGTAGATGAGACAAGGGTATGAAAGGCCTTTGCCATCTTCTTTGCCCAGTCCTGAAAGCACTGACGTAAGAGACCAGTCAGTTCTAATGTAAGGTGTATATTTTAGTGTCAGGGTATTGCAATTGTCACCTCTGTGGTCAATATCATTAAACAGGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032091_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.9=100)
A:
PF0008921=Trypsin=PD(19.6=88.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTACGAAGGGGAAGTGA
R:
GAGCTAGCCCATCTGACTCCA
Band lengths:
254-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types