RnoEX0092126 @ rn6
Exon Skipping
Gene
ENSRNOG00000026650 | Tmprss4
Description
transmembrane serine protease 4 [Source:RGD Symbol;Acc:1305033]
Coordinates
chr8:49469503-49472571:-
Coord C1 exon
chr8:49472429-49472571
Coord A exon
chr8:49471157-49471306
Coord C2 exon
chr8:49469503-49470711
Length
150 bp
Sequences
Splice sites
3' ss Seq
CCCGCCCTAACTTTCCACAGGGT
3' ss Score
9.98
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGAAGATGTCTGACACGCTGCTGCAGGCGTCAGTCCAGGTCATCGACAGCGCACGGTGCAATGCGGAGGATGCCTACCAGGGGGAGGTGACTGCTGGCATGCTGTGTGCAGGTACCCCACAGGGTGGCAAGGACACCTGCCAG
Seq A exon
GGTGACAGTGGTGGGCCTTTGATGTACCATTATGACAAGTGGCAGGTTGTAGGCATCGTGAGCTGGGGCTATGGCTGTGGGAGCCCAAGTACCCCTGGAGTGTACACCAAGGTCACTGCCTATCTTGACTGGATCTACAATGTTCGGAGG
Seq C2 exon
TCTGAGATGTAATGTTGCTATCTGCCACCCCAGAGGCTGCTTCCCCTCAGACCTGCCTACTGTGTGATCCCTCAAAGTCAGACATGGGACAAGAGCCTCCTTGAACAAACTCTGGTATTTCCTGCAGCAGCCAAGGACTCAGACATACGCATTGCAGAGGTGCCTGGAGTGGACTCAGGTGGACTGGCTCAGCCACTCCTGCCTCTCCCAAACCCTGGGAGACATGCGGTCCATAGGAGTGAAGCCATTGACACAATTCTCAGAAGTGTTATTCAGTCAAGGTGGCTCTCTCTTCCACTGAAGGAAGGGAGGTCAGCTTTCTCCTGAGAGCCCAGACCAGTGAGGACTGAGTAGATGAGACAAGGGTCAGAAAAGCTTTCTTTGCCTCGTCGTGAAAGCACTGGGTTAAGAGGTCAGTCTCTTCTAAGGTGAGGTGTATATTTTAATGTCAGGGTATTATTGTCCCTCCTGTGGTCAATATCATTAAACGGGTATGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026650_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.9=100)
A:
PF0008921=Trypsin=PD(19.6=88.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGTCTGACACGCTGCTG
R:
TTCAAGGAGGCTCTTGTCCCA
Band lengths:
246-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]