RnoEX6035521 @ rn6
Exon Skipping
Gene
ENSRNOG00000026650 | Tmprss4
Description
transmembrane serine protease 4 [Source:RGD Symbol;Acc:1305033]
Coordinates
chr8:49471157-49472879:-
Coord C1 exon
chr8:49472781-49472879
Coord A exon
chr8:49472429-49472571
Coord C2 exon
chr8:49471157-49471306
Length
143 bp
Sequences
Splice sites
3' ss Seq
GTATGTTTCCAACCTCCCAGGGA
3' ss Score
6.6
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCTCGGTCAGGCCCATCTGCCTGCCTTTCTCTGATGAAGAGCTCATCCCAACCATGCCAGTCTGGGTCATTGGATGGGGCTTTACAGAGGAAAACGGAG
Seq A exon
GGAAGATGTCTGACACGCTGCTGCAGGCGTCAGTCCAGGTCATCGACAGCGCACGGTGCAATGCGGAGGATGCCTACCAGGGGGAGGTGACTGCTGGCATGCTGTGTGCAGGTACCCCACAGGGTGGCAAGGACACCTGCCAG
Seq C2 exon
GGTGACAGTGGTGGGCCTTTGATGTACCATTATGACAAGTGGCAGGTTGTAGGCATCGTGAGCTGGGGCTATGGCTGTGGGAGCCCAAGTACCCCTGGAGTGTACACCAAGGTCACTGCCTATCTTGACTGGATCTACAATGTTCGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026650-'15-15,'15-14,18-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.7=100)
A:
PF0008921=Trypsin=FE(20.9=100)
C2:
PF0008921=Trypsin=PD(19.6=88.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGGTCAGGCCCATCT
R:
CCTCCGAACATTGTAGATCCAGT
Band lengths:
249-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]