DreEX6075369 @ danRer10
Exon Skipping
Gene
ENSDARG00000103117 | tmprss4a
Description
transmembrane protease, serine 4a [Source:ZFIN;Acc:ZDB-GENE-061103-631]
Coordinates
chr15:12524758-12526604:+
Coord C1 exon
chr15:12524758-12524853
Coord A exon
chr15:12524951-12525096
Coord C2 exon
chr15:12526455-12526604
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGTGTGGTTTTTTATTTCAGGAG
3' ss Score
9.63
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AATCACGTAGACCAGTGTGTTTACCTCCTCAAAACCTCGGTCTGAAAGGAGGAGACGGTTTAGTTGTCACCGGCTGGGGTCATATGGCAGAAAAAG
Seq A exon
GAGGAAGCTTGTCTTCAATGTTGCAGAAGGCTCAGATTCAGGTTATAGACAGTGCCCAGTGCTCCAGTCCAACAGTGTACGGCTCATCCATCACTCCCAGGATGATCTGCGCTGGTGTTATGGCTGGAGGAGTGGATGCTTGCCAG
Seq C2 exon
GGTGATAGCGGTGGTCCACTGGTGCATTTGGCTGACCGCTGGGTGCTGGTTGGAGTAGTCAGCTGGGGTGTAGGTTGTGCCAGACCAGGTTTTCCTGGTGTTTACACCAATGTGGACCAGATGCTTGACTGGGCCCATTCAGTAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103117-'13-15,'13-13,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.1=100)
A:
PF0008921=Trypsin=FE(21.1=100)
C2:
PF0008921=Trypsin=PD(19.4=88.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGTAGACCAGTGTGTTTACC
R:
GCATTACTGAATGGGCCCAGT
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]