BtaEX6058384 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021518 | TMPRSS4
Description
Bos taurus transmembrane protease, serine 4 (TMPRSS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001101973]
Coordinates
chr15:29229528-29232003:+
Coord C1 exon
chr15:29229528-29229626
Coord A exon
chr15:29229813-29229955
Coord C2 exon
chr15:29231854-29232003
Length
143 bp
Sequences
Splice sites
3' ss Seq
AGTGTGTTTTCAACCTCCAGGGA
3' ss Score
8.27
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
GCACAATCAGGCCCATCTGCCTGCCCTTCTCTGATGAGGAGCTCACTCCAGGCACCCCACTCTGGGTCATCGGATGGGGCTTTACAGAAGAGAACGGAG
Seq A exon
GGAAGATGTCTGACATACTGCAGCAGGGATCCGTCCAGCTCATCAACAGAACTCGGTGCAATGCAGAGGATGCGTACCAGGGGGAGGTCACCAAGACGATGATGTGTGCAGGCCTCCCGGAGGGCGGCGTGGACACCTGCCAG
Seq C2 exon
GGTGACAGTGGTGGCCCTCTGATGTATCACTCTGACTGGTGGCAAGTGGTGGGCATCGTGAGCTGGGGCCATGGCTGTGGGGGGCCTACTACCCCAGGAGTATACACTAAGGTCACAGCCTATCTCAACTGGATCTACAATGTCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021518-'17-22,'17-20,18-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.7=100)
A:
PF0008921=Trypsin=FE(20.9=100)
C2:
PF0008921=Trypsin=PD(19.6=88.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAATCAGGCCCATCTGC
R:
TCCGGACATTGTAGATCCAGT
Band lengths:
247-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]