MmuEX6065513 @ mm9
Exon Skipping
Gene
ENSMUSG00000037129 | Tmprss13
Description
transmembrane protease, serine 13 [Source:MGI Symbol;Acc:MGI:2682935]
Coordinates
chr9:45151245-45153461:+
Coord C1 exon
chr9:45151245-45151343
Coord A exon
chr9:45152997-45153139
Coord C2 exon
chr9:45153309-45153461
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCACGTTCACCTCACTGAAGAGA
3' ss Score
1.82
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTCACATCCACCCTGCCTGCCTCCCCATGCATGGTCAGACCTTCGGCCTCAATGAGACCTGTTGGATCACGGGCTTTGGCAAAACCAAGGAGACAGATG
Seq A exon
AGAAGACATCTCCCTTCCTCCGAGAGGTTCAGGTCAACCTCATTGACTTCAAGAAGTGCAATGACTACTTGGTCTATGACAGCTACCTTACCCCAAGGATGATGTGTGCCGGGGATCTACGAGGAGGGAGGGACTCCTGCCAG
Seq C2 exon
GGAGACAGTGGAGGACCTCTCGTCTGTGAGCAGAACAATCGCTGGTACCTGGCAGGTGTCACCAGCTGGGGCACAGGCTGTGGCCAGAAAAACAAGCCTGGTGTGTACACCAAAGTGACAGAAGTACTTCCCTGGATTTACAGAAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037129-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.4=100)
A:
PF0008921=Trypsin=FE(20.5=100)
C2:
PF0008921=Trypsin=PD(19.7=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACATCCACCCTGCCTG
R:
TCCATCTTTCTGTAAATCCAGGGA
Band lengths:
251-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: