DreEX6035864 @ danRer10
Exon Skipping
Gene
ENSDARG00000053315 | tmprss3a
Description
transmembrane protease, serine 3a [Source:ZFIN;Acc:ZDB-GENE-070912-70]
Coordinates
chr9:19744369-19749566:-
Coord C1 exon
chr9:19749471-19749566
Coord A exon
chr9:19747643-19747785
Coord C2 exon
chr9:19744369-19744521
Length
143 bp
Sequences
Splice sites
3' ss Seq
TATTGTGTTCTGTGTTTTAGGAG
3' ss Score
11.46
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GTATGGTGGAGCCTATCTGTCTGCCTAACTTTGGAGAGCAGTTTGAGGACGGTAAAATGTGCTGGATCTCAGGATGGGGTGCCACTGAGGATGGAG
Seq A exon
GAGATGCAAGTGTGTCTCAGCACTGTGCAAGTGTCCCTCTGATCTCCAATAAGGCCTGCAGTCAGCCGGAGGTTTACCAGGGCTATCTAACAGCAGGAATGATCTGCGCTGGCTATCTGGATGGAGGAACAGACTCCTGTCAG
Seq C2 exon
GGTGATAGCGGTGGTCCTCTGGCATGTGAGGATTCCTCCATCTGGAAATTGGTGGGGGCCACAAGCTGGGGTCAAGGTTGTGCAGAAAAGAACAAACCCGGGGTTTACACACGCATCACACAGTCCCTCACCTGGATACATCTGCAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053315-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.1=100)
A:
PF0008921=Trypsin=FE(20.7=100)
C2:
PF0008921=Trypsin=PD(19.8=88.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGAGCCTATCTGTCTGC
R:
CATCTGCAGATGTATCCAGGTGA
Band lengths:
243-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]