MmuEX0048170 @ mm10
Exon Skipping
Gene
ENSMUSG00000024034 | Tmprss3
Description
transmembrane protease, serine 3 [Source:MGI Symbol;Acc:MGI:2155445]
Coordinates
chr17:31183814-31186598:-
Coord C1 exon
chr17:31186503-31186598
Coord A exon
chr17:31184569-31184711
Coord C2 exon
chr17:31183814-31183966
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTTACATTACTCTGAGGCAGGTG
3' ss Score
1.67
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AGACCATCCAGCCCATCTGTCTGCCCAACTCTGAAGAGAACTTTCCCGATGGGAAACTGTGCTGGACCTCAGGATGGGGAGCCACAGAGGATGGAG
Seq A exon
GTGACGCCTCCCCTGTCCTGAACCACGCGGCTGTCCCTTTAATTTCAAACAAGATCTGCAACCACAGGGACGTGTATGGTGGTATCATCTCTCCCTCCATGCTCTGTGCAGGCTACCTGAAGGGCGGTGTGGACAGCTGCCAG
Seq C2 exon
GGAGACAGTGGAGGACCCCTGGTGTGCCAGGAGAGGAGACTGTGGAAGTTAGTGGGTGCAACAAGTTTTGGAATCGGCTGTGCTGAAGTGAACAAGCCTGGAGTCTATACGCGAATCACCTCCTTCCTGGACTGGATTCACGAACAGTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024034_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.1=100)
A:
PF0008921=Trypsin=FE(20.7=100)
C2:
PF0008921=Trypsin=PD(19.8=88.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCATCCAGCCCATCTGTC
R:
TGTTCGTGAATCCAGTCCAGG
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types