BtaEX6003795 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021280 | TMPRSS3
Description
transmembrane protease, serine 3 [Source:HGNC Symbol;Acc:HGNC:11877]
Coordinates
chr1:144225301-144227410:-
Coord C1 exon
chr1:144227315-144227410
Coord A exon
chr1:144226092-144226240
Coord C2 exon
chr1:144225301-144225453
Length
149 bp
Sequences
Splice sites
3' ss Seq
CCCCCCATCCCCTTGCTCTGACC
3' ss Score
-1.94
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
AGATGACCCAACCAGTCTGTTTGCCCAACTCCGAAGAGAACTTTCCTGATGGAAAATTGTGCTGGACATCAGGCTGGGGGGCCACAGAGGATGGAG
Seq A exon
ACCCAGGTGATGCCTCCCCGGTCCTCAACCATGCGGCCGTGCCTCTCATCTCCAACAAGGTCTGCAACCACAGGGATGTGTACGGTGGCATCATCTCCCCATCCATGCTCTGCGCTGGCTACCTGAAGGGTGGTGTGGACAGCTGCCAG
Seq C2 exon
GGAGACAGCGGGGGTCCCCTGGTATGTCAGGAGCGGAGGGTGTGGAAGCTGGTGGGAGCCACCAGCTTTGGCATCGGCTGTGCCGAGGTGAACAAGCCTGGAGTCTACACACGCATCACTTCCTTCCTGGACTGGATTCACGAGCAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021280-'9-12,'9-10,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.080 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
PF0008921=Trypsin=FE(21.4=100)
C2:
PF0008921=Trypsin=PD(19.7=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCAACCAGTCTGTTTGC
R:
CCATCTGCTCGTGAATCCAGT
Band lengths:
244-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]