RnoEX6062127 @ rn6
Exon Skipping
Gene
ENSRNOG00000001165 | Tmprss3
Description
transmembrane serine protease 3 [Source:RGD Symbol;Acc:1310135]
Coordinates
chr20:9915280-9918108:-
Coord C1 exon
chr20:9918013-9918108
Coord A exon
chr20:9916046-9916188
Coord C2 exon
chr20:9915280-9915432
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTCACATTACTTTGAAGCAGGTG
3' ss Score
4.34
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGACCATCCAGCCCATCTGCCTGCCCAACTCTGAAGAGAACTTTCCAGACGGGAAATTGTGCTGGACCTCAGGATGGGGAGCCACAGAGGACGGAG
Seq A exon
GTGACGCCTCCCCTGTCCTGAACCACGCGGCCGTCCCTTTAATTTCAAACAAGATCTGCAACCACAGGGATGTGTATGGCGGTATCATTTCACCCTCCATGCTCTGTGCGGGCTATCTGAAAGGCGGTGTGGACAGCTGCCAG
Seq C2 exon
GGAGACAGCGGGGGACCCCTGGTGTGCCAGGAGAGGAGACTGTGGAAGTTAGTGGGTGCGACAAGCTTTGGAATTGGCTGTGCTGAGGTGAACAAGCCTGGAGTCTACACACGAATCACCTCCTTCCTGGACTGGATTCACGAACAGTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001165-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.1=100)
A:
PF0008921=Trypsin=FE(20.7=100)
C2:
PF0008921=Trypsin=PD(19.8=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCATCCAGCCCATCTGC
R:
TGTTCGTGAATCCAGTCCAGG
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]