GgaEX6004450 @ galGal4
Exon Skipping
Gene
ENSGALG00000016169 | TMPRSS3
Description
transmembrane protease, serine 3 [Source:HGNC Symbol;Acc:HGNC:11877]
Coordinates
chr1:108738950-108741104:-
Coord C1 exon
chr1:108741009-108741104
Coord A exon
chr1:108739756-108739898
Coord C2 exon
chr1:108738950-108739102
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCTGTTTTTGAACAGGTG
3' ss Score
11.19
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTCACATAGAGCCAATTTGTCTGCCTAATTTTGGTGAACAGTTCCCAGAAGGAAAAATGTGTTGGGTATCAGGATGGGGAGCAACTGTTGAAGGAG
Seq A exon
GTGACACATCCGAAACCATGAATTACGCAGGTGTTCCCTTGATTTCTAATAGAATTTGCAATCACAGGGATGTCTATGGTGGGATCATAACCTCTTCAATGCTTTGTGCCGGTTTCCTAAAGGGAGGAGTGGACACCTGCCAG
Seq C2 exon
GGAGACAGTGGCGGCCCTTTAGCATGTGAAGATATGAGTATCTGGAAGTTGGTGGGAACCACCAGCTTTGGAGTGGGCTGTGCAGAAGCGAACAAGCCTGGTGTCTACAGCCGAACTACCTCCTTCCTGGGCTGGATACATGAGCAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016169-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.1=100)
A:
PF0008921=Trypsin=FE(20.7=100)
C2:
PF0008921=Trypsin=PD(19.8=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATAGAGCCAATTTGTCTGCC
R:
TCTGCTCATGTATCCAGCCCA
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]