GgaEX1059420 @ galGal4
Exon Skipping
Gene
ENSGALG00000021273 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr24:5414567-5415266:-
Coord C1 exon
chr24:5415168-5415266
Coord A exon
chr24:5414803-5414945
Coord C2 exon
chr24:5414567-5414719
Length
143 bp
Sequences
Splice sites
3' ss Seq
CGGCTCCTCCTGCCTTGCAGATA
3' ss Score
10.31
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCAGATTCGCCCAGCCTGCCTCCCCATGCACGGCCAGCGGTTCCAGACCGGCAGGTCCTGCTTCATCACCGGCTTCGGGAAGACCAGGGAGAACGAAG
Seq A exon
ATAACACCTCCCCAAAGCTGCGGGAGGCCGAGGTCAAACTCATTGACTACAAGATCTGCAACAGTGACAAGGTGTACGAGGGCTACCTGACCCCGCGCATGATGTGCGCTGGGTACCTGCAGGGGGGGAAGGATGCGTGCCAG
Seq C2 exon
GGGGACAGCGGGGGGCCCCTGGTGTGCGAGGACAACGGCCGCTGGTACGTGGCTGGTGTGACGAGCTGGGGGACGGGATGTGGCCAGAAGAACAAGCCTGGGGTATACACACGTGTGACGAAACTCCTCGGCTGGATCTACAGCAAAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021273-'13-15,'13-14,15-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.377 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.4=100)
A:
PF0008921=Trypsin=PD(15.2=83.3)
C2:
PF0008921=Trypsin=PD(19.7=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGATTCGCCCAGCCTG
R:
CTGTAGATCCAGCCGAGGAGT
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]