DreEX6012253 @ danRer10
Exon Skipping
Gene
ENSDARG00000077573 | tmprss13b
Description
transmembrane protease, serine 13b [Source:ZFIN;Acc:ZDB-GENE-090309-2]
Coordinates
chr5:37290319-37290964:-
Coord C1 exon
chr5:37290866-37290964
Coord A exon
chr5:37290624-37290766
Coord C2 exon
chr5:37290319-37290474
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTCAATGTGTGTGTTTGCAGATA
3' ss Score
9.31
5' ss Seq
CAGGTTATA
5' ss Score
1.5
Exon sequences
Seq C1 exon
GCGATGTAGAGCCCATATGCCTGCCTGTGATTGGCCAGACGTTTCCACCTGCCAAACAATGCTGGACAACTGGTTTTGGAGTTATTCGACAAGGCAGTA
Seq A exon
ATAGTGTTTCCACTTCTCTAATGGAGGTCACAGTAAGCCTGATAGACTCGAGTGTGTGTAACTCACCTAATGTTTACAATGGAGAAATCACCGAGAACATGCAGTGTGCTGGAGACCTTAGAGGAGGAAAAGACTCGTGCCAG
Seq C2 exon
GGTGACAGTGGTGGTCCATTGGCATGTAAATCAAATGATGGTCAATGGTTTCTCACAGGCGTAACAAGTTGGGGAGAAGGCTGTGGACAGGTGAACCGTCCGGGGGTCTACAGTGATGTAGCCAAATATTTAATGTGGATATATAGCAAGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077573-'14-18,'14-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(29.7=57.6)
A:
PF0008921=Trypsin=FE(20.5=100)
C2:
PF0008921=Trypsin=PD(20.1=88.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATGTAGAGCCCATATGCC
R:
CTGCATCTTGCTATATATCCACATT
Band lengths:
255-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]