RnoEX6032986 @ rn6
Exon Skipping
Gene
ENSRNOG00000000184 | Tmprss6
Description
transmembrane serine protease 6 [Source:RGD Symbol;Acc:1307138]
Coordinates
chr7:119659973-119662155:-
Coord C1 exon
chr7:119661884-119662155
Coord A exon
chr7:119660215-119660351
Coord C2 exon
chr7:119659973-119660009
Length
137 bp
Sequences
Splice sites
3' ss Seq
CCTCAGTTTTGCTTCTGCAGGTC
3' ss Score
8.65
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CATGGCCTCCCCGAGGCTGTGGACCGTGTTTCTGGGAAAGATGCGGCAGAATTCACGCTGGCCGGGCGAGGTGTCCTTCAAGGTGAGCCGCCTGTTCCTGCACCCGTATCATGAGGAGGACAGCCATGACTACGACGTGGCCCTGCTGCAGCTGGACCACCCTGTGGTGTACTCGGCCACCGTGCGCCCCGTCTGCCTGCCCGCACGCTCTCACTTCTTTGAGCCAGGCCAGCACTGCTGGATCACAGGCTGGGGAGCCCAGCGAGAGGGTG
Seq A exon
GTCCTGGTAGCAGCACCCTTCAGAAGGTGGATGTGCAACTGATCCCTCAGGACCTGTGCAATGAGGCCTACCGTTACCAGGTGACCCCACGCATGCTCTGTGCTGGTTATCGCAAGGGCAAGAAAGATGCCTGCCAG
Seq C2 exon
GGCGACTCTGGAGGCCCACTGGTTTGCAAGGAGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000184-'21-26,'21-25,22-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.130 C2=0.077
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(46.7=100)
A:
PF0008921=Trypsin=FE(23.1=100)
C2:
PF0008921=Trypsin=PD(5.6=84.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGTGTCCTTCAAGGTGAG
R:
GGGCTCCTTGCAAACCAGTG
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]