GgaEX1059432 @ galGal4
Exon Skipping
Gene
ENSGALG00000012483 | TMPRSS6
Description
transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:HGNC:16517]
Coordinates
chr1:51332908-51335342:+
Coord C1 exon
chr1:51332908-51333179
Coord A exon
chr1:51334327-51334463
Coord C2 exon
chr1:51335184-51335342
Length
137 bp
Sequences
Splice sites
3' ss Seq
TCTTGGTGCTCTACCCCCAGGGC
3' ss Score
9.41
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
ACTGGCTTCTCCCTCTGTCTGGACCATTTACTTGGGCAAATACTTCCAAAACACCACCAGCCACACAGAGGTGTCCTTCAAAGTGATCCGCCTCTTCCTCCACCCTTACTATGAGGAGGACAGCCATGACTATGACGTGGCCCTGCTCCAGCTGGACCATCCTGTTATCATCTCACCCTTCATCCAGCCCATCTGCTTGCCTGCCACTTCCCACCTCTTTGAGCCTGGCCTTCACTGCTGGATCACTGGCTGGGGAGCCCTCAAGGAAGGTG
Seq A exon
GGCACATCAGCAATATCCTGCAGAAGGTGGATGTGCAGATCATCCAGCAGGACATCTGCAGCGAGGCCTATCACTACATGATTTCTCCCAGGATGCTCTGTGCTGGCTACAACAAGGGCAAGAAGGATGCCTGCCAG
Seq C2 exon
GGCGATTCTGGAGGTCCACTGGCCTGTGAGGAGCCCAGTGGCAGGTGGTTTCTGGCTGGTTTGGTCAGCTGGGGAATGGGGTGCGGGCTTCCAAATTACTATGGAGTGTACACCAGGATCACCCAAGTTCTGGGCTGGATGAACCAAACCATGAGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012483-'16-18,'16-17,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.6=100)
A:
PF0008921=Trypsin=FE(19.6=100)
C2:
PF0008921=Trypsin=PD(20.0=86.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTTCCTCCACCCTTACT
R:
GACCAAACCAGCCAGAAACCA
Band lengths:
249-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]